Scaffold Water_101054

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_101054
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5398
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016797	Metagenome	244	N
F018540	Metagenome	234	Y
F052601	Metagenome	142	N
F068849	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10105410	F016797	N/A	MDTLEILKAKINLQTTIIKFTNSIEELQDKHPERKDLIDSMLDSLEDVQQFQSVFMQFEDQYLLECKSNLRLQMVISEQKHELDKLSILVENLKEGI*
Water_1010543	F068849	N/A	MKRIETLETLTQIDEYIKYYKERINERQWSNEFGTGLQLQSIRKINDHDIDIYTRCIERLNDRFRKLAITLK*
Water_1010545	F052601	N/A	MSYEIEIEYYDQDGAIFYIGETPYQVELFIETRMIEELDSYNSFNDKLSYAQVEQRYYRVQKETLICDGVNYYSEIDICEELEEILNKWNN*
Water_1010546	F018540	N/A	MEQLRLDWWDKFNDELYCNYLIAKDEKMNTYKILYRYYKGANTDAECCQAVKYIKAEDKQEAIKLFGLWEKLIISIEKV*