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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002930 Open in IMG/M |
| Scaffold ID | Water_100889 Open in IMG/M |
| Source Dataset Name | Estuary water microbial communities from Pearl Estuary, Zhujiang, China |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5931 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pearl Estuary, Zhujiang, China | |||||||
| Coordinates | Lat. (o) | 22.67 | Long. (o) | 113.71 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F006264 | Metagenome / Metatranscriptome | 377 | Y |
| F040590 | Metagenome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Water_10088910 | F001915 | GGAGG | MEWRLAHPLDDVEDIVELADTVFGAEADAILTRNRDVFRKHVTVAATVQLFDRGKEFLAVCRDVDRLVAYCWFDRGGYTTYANEEISNAKFHHVDLGLPAKTRVRLLNQMIDQHILWASNWGIPVICSTSIRTEHDGFMRIHKKRGFTVNGSYAWIKTQDGLKGIK* |
| Water_10088914 | F040590 | GAGG | MSAYGKVISGGKAMTNGLTKGINKKLEAFSDSHKRSKLLANSVRDTFNQNPLSDPHLNNINVAASKKFTTPKLPTKV* |
| Water_10088915 | F001059 | AGGA | MATYDIEALKEDLPTAKDLAQFVYDKTQIALDLIGKPKEDQYQVAKNALEGRKIPSEYVTDVNPYIDRKELIPEDELAALPERPTDLPDIDSQIHYFGATNMPHPSNPQSDEKVAIDFRKYDNGTVTFQIVGPVYQMAVGERLNKFGQRVPEKYTWNDPRTPETLMKRPDGTFTERGRKLFQYCSGEKGGGIWSLIDRELTSISSKNIVDPWA* |
| Water_10088916 | F006264 | N/A | MEDQSSVFRQKLSAQAEVCARKTLEWLQKDLQGDRTLAPQDVYYLSSAADLLLAMRDLYGKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |