Scaffold Water_100829

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100829
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6104
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F064498	Metagenome	128	Y
F065546	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_1008294	F064498	AGGAG	MKRKRWVYKVFYANRFVAQFTSRKAARHFMENMTDLDLPFLITPDIANQTAYMIGEVK*
Water_1008296	F065546	AGGAG	MTVMTEQQIVNARLLTLRAMLKLEMKGMTRSRAPSAYSMLKSMGYKGTREAVLATLDKQREEILTGVIASEA*
Water_1008298	F006696	GGAGG	MNFFRFLKQYWRDLTPLEVVTRELALAHLERLDAEGAVEYAQAVLEYNERRIERLNLRIKEYK*