Scaffold Water_100809

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100809
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6188
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F047926	Metagenome / Metatranscriptome	149	N
F051114	Metagenome	144	Y
F058949	Metagenome	134	N
F060785	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10080911	F009493	N/A	MKTRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALKEVKEQLGFNQGPAYNSFRVTANVRYRYDLDNSIIAVKFTSDALKALGWIKDDSPKYFRHLLLVWKESLPANTAEIIITLSDEYPE*
Water_1008092	F051114	N/A	MRNKAIDKVLEHNAQLFQNLGIDSSKAEVQAAKVQERKNLRSVRHYNPELIDRLINDGDK
Water_1008095	F058949	N/A	MFNNNSYEYKKAIRAKAAKAFGPTIKLDLFLEFIGFWDARDYKNANEIRTEAKDMHLYKVVSYMNQYTDG*
Water_1008097	F047926	N/A	MWIEIAKNTWAQARDEKDAERIKKKWKDYKKKQGDLTSRHYIVNYIENENTIK*
Water_1008098	F060785	N/A	MKISADKNLNLVTVLHENKNDRGAKGHLGSYLVQKAETVYGVSRSEDGNSTFIEGLYTRNASFPDLELNVIGRDVEISVKELEGPGGKEWTVDELERLAKSVQGKTINQAKTFIRDVESCKLVEASTAVSLMEAGKYIMLTNEKNPKILVNLNGSNQSTDEPPF*