Scaffold Water_100714

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100714
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6616
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013503	Metagenome	270	Y
F031035	Metagenome	183	Y
F034802	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10071415	F031035	GGA	MDKELITLRIQDLISKGKELEVQLHQINGAIQQCQWTLAELEKSDAEEIDKPESV*
Water_1007142	F013503	GAGG	MALSNFRNNVKQESGFDEEQRLMCSYPGCHKRWTVHVSGDKPKCSEHQWGKDKTTYSHPTIEKSVTQTVQQWYEKEDF*
Water_1007143	F034802	AGGAGG	MTKAEAHELLDARRRGLSVLPSAIDTALFLTGDLGGNALVFSEGMDKSLQQKSPRSWQSKGYEVVAGTGRYYGSEEWFKANYGFKEANE*