Scaffold Water_100406

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100406
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9410
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F013099	Metagenome	274	Y
F021087	Metagenome	220	N
F065670	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10040611	F013099	GAGG	MNTIFILIWFVVVPEVGVRYYHLGTYENETMCETSLRNASVMVNDKQETIECIGVTVDD*
Water_10040614	F021087	AGG	MRMFNMTLEQHLEEMGIRPKSIIRELEELLDPRLEYLAKGYFNDPRNGNNEVPF*
Water_1004067	F065670	AGGA	MTREEIKKLIRALDKSEDVTVEEAVYLIRKRQRELENLEVEYELNWA*
Water_1004069	F000375	GGAGG	MAKLYDLEPMIMDCWQVCNDLEVVFRQIGDGEREPTQDELMNTLMGMQQLYQWKFEQLFFKYEQVIAEGRKNHD*