NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Water_100404

Scaffold Water_100404


Overview

Basic Information
Taxon OID3300002930 Open in IMG/M
Scaffold IDWater_100404 Open in IMG/M
Source Dataset NameEstuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9449
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location NamePearl Estuary, Zhujiang, China
CoordinatesLat. (o)22.67Long. (o)113.71Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022858Metagenome / Metatranscriptome212Y
F091975Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Water_1004044F022858AGGMKKTIDTIKGNLKTILSFADSEFLELLIAILHTFLLPLAVWTEIGFKWHVIFLAVGGGLFQFYSVGIRDLRCRYYSTIVATFVAILTAEQYLMNGLMFEAPSRFGWLIIAFAAIVNQIRVTKQWKHKN*
Water_1004045F091975N/AMETQELIIAVATILGSGAAFKFYEYSIKTKRDAARELRQERRAENPETMFRDDLKKRVEEMSVALDSANLKILELTQKVAELETENRYLHREIDILKRK*

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