Scaffold Water_100364

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100364
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10070
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022785	Metagenome / Metatranscriptome	213	N
F040054	Metagenome	162	N
F058153	Metagenome	135	N
F072361	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10036413	F072361	GGAGG	MLDLSKSDETFLSERFKDYLTVASRDFRRGFTDGVACNDQAYPATDTYLSGYADGYALTQMRQASQHAGETL*
Water_10036414	F058153	GGAG	MARFDFYEILINHPSWEESFHDITDPDIRREIMCDVEDISSEIAPTAMQQTGSEIEWVDLIFNDEVDPAVVVAKTRELLWNYSESMIVDLIEAEAAKHAEAYDA*
Water_10036418	F022785	N/A	MGVEQSVAKLEAQQEAMAQDVSEMKSALTSIAQTLRDLSSMEQRQIYLAETVARAHKRIDEIQAIVKDEVKNHEKRIQAIEISIAKNQWIERIIMAALMTGIGIWIKGGIY*
Water_1003642	F040054	GAGG	MTKLPILSMPLPDGGSVVCRLEAIMGATSNMRNNELTDVYVDVMCPEGITIDVDIDSFTQNWLAALITPMSEMREDHEMH*