Scaffold Water_100361

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100361
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10093
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F024541	Metagenome / Metatranscriptome	205	N
F063638	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10036111	F001668	GGA	MATVYLPVEPIEGMDSAQRADALDAEVWALLRPAALQLPQDTKYLYPRTVHPDTGQTAIIGDTTDDIYIHPDVDLTELLALLPEVPQEEKDGLVMFIDANRGGSVPFGQLIPSTSTQLTEEEARALGWIPDPIEP*
Water_1003612	F024541	GGA	MIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLDAIADNCRLSRQEVRWEFRYHTENA
Water_1003618	F063638	GAG	MLDTLDTLTAVIDTVTTVVIVDPVILDPMEPWYVTHYVELIFIALAAAKAVLNLVPSEKPRVLFGYLDTLIGLIFKDRRK*