Scaffold Water_100291

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100291
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11240
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001407	Metagenome / Metatranscriptome	702	Y
F005105	Metagenome / Metatranscriptome	412	Y
F015027	Metagenome / Metatranscriptome	258	Y
F045427	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10029111	F001407	AGGAGG	MSIIKQDQRRLDNIANAYWKTSGDVREMWGRKWYELIRIIVRRIDENKRFSTDTRKVH*
Water_10029116	F045427	GGAG	VIELIKRILRLKSIDRDRGTNPAKGVSLDLSDEGISKPEQRLSASDGESTGRSVSTDDMEYQGGGAYKAILKLFSNQLDDEKFAEHCKKFFKGNNDD*
Water_10029120	F015027	AGGAGG	VTDELYEATKKEVMSEHEEYVNADVPIEIWIERNKYLHQHIDMLTEELIKVRLDNKKLSKQIEDQIKQFRNTGGI*
Water_10029122	F005105	GGA	MVRKICDRCMGNGYRRIWKDQTESEKITIQCMKCESAGEIDEEPSYDYSGVDINKLQ*