Scaffold Water_100248

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100248
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12334
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10024811	F018369	AGG	MKNSYIQLTDEGKRQLMRELSLELTDKKIAELMDQFADGVKTDSNGEPYIKIDRDDVLMCAVPLYTHFIDINHIETVTANEEDYE*
Water_10024812	F046382	GAGG	MNKRNWPFLTDLGDPNWTGRTTRQMRDYKRHDDRIPPVAWVMGLLALALVFGFFPLLSLVMQ*
Water_1002487	F016273	N/A	MTQLEEAILISWRLQQWYEGMVLDARAMQDLQDAIEMLKQLAKQVQK*