Scaffold Water_100237

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100237
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12536
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y
F039032	Metagenome / Metatranscriptome	164	N
F055425	Metagenome / Metatranscriptome	138	N
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10023711	F039032	N/A	MVTLSEVDHKIDAHVDVCAIRYEGIEKETRGIHARIKRLEQILITGGGAIIMMLLTMLMKVH*
Water_10023717	F057197	GAGG	MTDFAAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDTLGFFEATHTAEAEKAGE*
Water_10023719	F019099	GAGG	MIVKRKFIKDWDKSQISTGYQRPNQFRIITWDMGRIQSWLLGKQPLARTLLEKVIR*
Water_10023720	F023293	GGAGG	MKYGILDDEGNVIRWVWFAPPYPHVAVKVPRPRKPKLDLSQVPDAPF*
Water_1002375	F055425	N/A	MITNDEKLASAVMNAYYREMEIHAYQVNIDNYSAMLLALPSEDWPQDWVAFKGVKIDELPHSLSDDDAQAISDYQYRDRLRSLIRTERAEQSKTIRIRDVLKAQIGDSYEAQILAYKATQP*