Scaffold Water_100235

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100235

Scaffold Water_100235

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100235 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12659
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (92.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037491	Metagenome	168	Y
F070058	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10023517	F070058	AGGAG	MAMDTWFIVQKFNRKTWEWEERDDDGSSWNSTLSNAKYFCDRHIADGEECRVVKEEVVYAPDA*
Water_10023520	F037491	AGGAGG	MHFTELRVAGYFIDAVLRDPDKSISVHGDGEYADVEKSREYFTIRDHMGECDFDDVGVWSDQRESYIAWFQFVYGNVTSTSEPMEVISDYTANEYGDNIIKRVEWCTE*

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