Scaffold Water_100206

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100206
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14128
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015857	Metagenome / Metatranscriptome	251	Y
F093169	Metagenome	106	Y
F098563	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10020612	F093169	GAGG	MMDYSCPMPSTLGILEPMNPMRPQQYNSYVGPLVASDWNVPVHDMGYNYQVSEPTGGRILNGIPEAMRVFDAVDFLFPV*
Water_10020620	F098563	GAGG	MAEILRKMTLKSLGLTETNLKAIVDASGGHGCAVANIVGKITGSQPGQTALGEYVKLVGQFYGLNLDTGEAFEASTCLLPNFISDTLVGALDKSDEVEFGIQVGVKGAKSATGYEYTCRPLIESKPSDAMQKLISIAMATTPKALAA*
Water_1002066	F015857	GAGG	MNGQSTYSISDIESFASKFYQGRPLLLTPYAYVLTFSSLAAAGSATQTLNITANADFIFTMMHHRASVNGAAQTVSTKTAPLVRILITDSGTNEQFTNAAVDLENYSTNGNIVNDLPYPRIVSGRSTLTVQLSSYEASNTLNIDLSLEGVLVRAFTS*