Scaffold Water_100160

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100160
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16106
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002322	Metagenome / Metatranscriptome	571	Y
F002542	Metagenome / Metatranscriptome	550	Y
F018181	Metagenome / Metatranscriptome	236	N
F037238	Metagenome / Metatranscriptome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10016018	F002322	GGAG	MIAALPYSKLVEKHILECIQGGIGIRQMIASMQHLQDAPKSLSTMYKIYGSFIEMERAKINGAVGKRVIDQALDGDFKSQELFLRSKGGWSPTQTNIEVEQETDPDLDESAVDTLMSLLGYNENGPEEETTCTCGEEDNCRCS*
Water_1001606	F018181	AGGAG	MKQSIKINSSFYKKMEILDEYVEEYVSDQLIDIAQTAVNLSPVDTGAYVTSFSYSVGAGRPRGKSSDNRPKKQNPQAMRQEGLSNLMGDINKVDLKNTTSITLRNASPHADDVENGGPSWRRAGYKVFAQIRDIYG*
Water_1001607	F037238	AGGAG	MSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGTVDSSVTTDYSVKGYLYNYNVGVAGGNDEVVRGTRKCVISALDLAAIPDFDDLIIGSGDTVKITSVMSLFSAGTAIGYICDVGE*
Water_1001609	F002542	GGAG	MHPTYLGWQVDWPVFIKMPLLADNTNWKRGDHFNWAERGINQDKVATLYASGYIHHNKELEVQNKVGDRLSELAGKDLETLVNLLNVEVNKRTSSKTEFESKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYDIRDKVLAD*