Scaffold Water_100101

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100101
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19297
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (82.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002399	Metagenome / Metatranscriptome	563	Y
F010392	Metagenome / Metatranscriptome	304	Y
F025510	Metagenome / Metatranscriptome	201	N
F035770	Metagenome	171	Y
F066237	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10010116	F066237	AGGAGG	MFDVISYDANGNEDKVMANKLKQGFAKVYDNTCKECLGTGKRKITFEDCFGKPVPEKTVYLKCKCKEVK*
Water_10010122	F002399	AGGAGG	VALKNKSHKSILGQMRKKYGLKDNVDPKKAEIAMTPDDWKIFSEALTFPNGKPSTREDK*
Water_10010123	F035770	GGAGG	MKSKNISFRQAEFAYARHLRDVVKHEREIIYPNEDKSNKSRDGVWHLLTIKGEPLGMVYPNGTVRLT*
Water_10010132	F010392	N/A	MMSEKNKTENVEEPTIKFADDGVEHKVNDMPDEAKQLMARWQEKKQIRDEFIIKANNDIDDLNILLSSYEARMKNIVEPAEDEPKIEVQ*
Water_1001019	F025510	AGGA	MKYIKKFWVWLKETIHKFLNWFDNLMTPAPVVKKRGRPRKK*