Scaffold Water_100084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Water_100084

Scaffold Water_100084

Overview

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100084 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21151
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F058643	Metagenome	134	Y
F100247	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10008412	F058643	N/A	MNDINPIETARELATHANDIQHLQADMDKLVSDMEAVKKSLSEIERLLSEDKASKKTMHTVVNVVAVLFGGLIVALFEKFVK*
Water_10008430	F100247	GGAG	MATTYINAPKGSDITYDQFAFGIGTQARITLEESEVWHKQYTKEDKEAQKAWAYEWRVNYLMGFLQVSSKEADRILSQSRDERKPDHQKAYKRANSQFVYHIVRPEQATSFKQAKVSLDKVIELFEQLSKAEQAKFMRIIK*

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