Scaffold Water_100075

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100075
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23113
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001153	Metagenome / Metatranscriptome	764	Y
F012352	Metagenome / Metatranscriptome	281	N
F036708	Metagenome / Metatranscriptome	169	N
F047386	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10007512	F036708	GAG	MRTQLKVMPSLQRKIDGLKALAEQQVERKLIDMAVDAVGLGTIRVPVDTGAYVTSFSFNVGAGRPRGKSSKNKPKANEQAARNEGLSNLTQDLERIPSLLDTTRIELRNNSPHANDVERGEGWPKTNGYFVFTQLKRKYKRG*
Water_10007513	F012352	AGG	MAFSRGYNLLKMVEEFGEPLTLRKKTTAGTYDPTTGSVTGSATTDYSFEGYFYNYDQGIIANVDEIRRGTRKCVVPALGLAVEPDDEDQIIGNGDTVNVISVVTIFSNGVKLCFLCDVRE
Water_10007515	F047386	AGG	MIRQENMPFQIDRPVFVKHPFQSWGRQLKKGEEFKWKEIGVTEEKALILYTQGFIHHNSGFEVELKVGDGLEQLDVAGLHGLVDSINEKVNSKTKSDAEFQKKKCKKSKIVDKQRGLIRSWRRNYGHMETN*
Water_10007524	F001153	AGG	MSIHDKIPYSEVIAKKVREGIRSGVSVKDILSSIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALEGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMNLLGKTRDNSAST*