Scaffold Water_100057

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100057
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26253
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F014505	Metagenome / Metatranscriptome	262	Y
F016957	Metagenome / Metatranscriptome	243	N
F024891	Metagenome / Metatranscriptome	204	Y
F025860	Metagenome / Metatranscriptome	200	Y
F055664	Metagenome / Metatranscriptome	138	N
F061808	Metagenome	131	N
F083262	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10005711	F025860	N/A	LTKSKERKMNTENIYQVIEDLETFADQIGSEWMKERVAMLEAQIGNLETFNNQ*
Water_10005715	F012872	N/A	MDLHFEGNRLYYMEKEAELFKCLDYLSKELSEQEAMNKEQLWEVFHICADTAAVYRHITDYFTTLDRLILDARIENGKLKQEVYDHKKENARLQESLERYMDEF*
Water_10005716	F013704	N/A	MNNGQRFEVSGMEFICIETHAYFQTRLDGEESDIDVGSSYYIVRNTSTGQLHRIPFQRIIEKENEIKWKN*
Water_10005719	F014505	N/A	VGNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFVRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISIEDMTHDQLEFEEYPEQKVAMEKLINYMEEELDEFHWYDAKMMRIYMNGTSMNKIHRESDIGLTSIKNTIKNGKARIYEKIKEDYQDFENGDFDKI*
Water_10005720	F016957	GAG	MQLRNYLKDKRKLTESRTKVCVEVGKTGEALFKEITGALKSNLADDKKHIDFYWGEKRVDVKGLKKMHLSGFLLLEFVNVWGGDGWCSKKSKADFIAFQFPDAFYVFRKKHLRVRAIELCEPFYKDKVERRNYIPYDDALHKWVGRWNAQDVFTYLKFEDVEDLVFEVLPYTIKE*
Water_10005724	F061808	N/A	MNKFRVFVKDKFDVVFDTIEKARDCRRALQQLKYTGIEIIVTQEDIDPR*
Water_10005727	F055664	N/A	MDSNKTSSQILINRKNLEMFIHILTQVHMRGHLSADEQAFVGKFVDLPDAPTKANRSQRRLNQKMINQIIREERKRNLEE*
Water_10005743	F024891	N/A	MIIVEENTTATIKMYLRDFTTESFEIEIISEDQRKEVVDTSLSGTWDDFRKVLTFTYDVSALVAENFYVVKIWEASKVKLLSQDRMYILPSGSDVATYQPKLATTEKTMDNEFKIYGE*
Water_1000579	F083262	AGCAG	MRDPNIDRYLHKMAMLFQNLGTDSTPEERIYAKEEEHRYLGRIAEIDWEYAQRLGYD*