Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100055 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100055 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26722
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (76.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

26722

Total Scaffold Genes

30 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (76.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F002997	Metagenome / Metatranscriptome	514	Y
F006660	Metagenome	367	Y
F022651	Metagenome / Metatranscriptome	213	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10005513	F006660	GGAG	MSFQTIFNISQSISVQNRRTVGQQVSRSGQVRVAQYLTSVPWNFVVKPHNFLYYPQVRDVIQVIDNYDRQIPQTITFSGSNLNWFTAYQGQFTQAQAAAMTIYNYTANSTSLQLSNLPTPSGWSPTQYLFKAGDFIQIGVYSYKVTADVLRGSGGTVTFNVHRPIIGTPTIGSALTAVGSDCTFYLLASQCPTYTLNPMTNGAFVQWDGDFVFIEDITG*
Water_10005518	F022651	GAGG	METKIQNTNDLLGFLVAQSESRKDWFGFHQQRMTAVTLAHEIARHHADKMTPDEVVSYALELNNKIYHKIIKG*
Water_10005523	F002997	N/A	MAIARFENITVNRLTFGVSAFGEQSTTITQWFQTRARVHSVANHVKISEKYRVYSDIVDFTLNYTPNTKEMIDNQNLYSINWRNFDWRIDNVREADDRMTVKIMCVRNDPVAAV*
Water_10005530	F092064	AGG	MRTPPRQIIGFIRNPSTWNAQAFETAIRNDVENSTGSITAADEMLIGSLVIVTETMITAHSNIMELGPIYSYHSGDAPSPWYKIRTESLDKAIKILAELALVARGRPKKSNTPTDVDELFATA*
Water_1000558	F001991	GGA	LAIFNKNTLAQVSGFSNSIIAGELVYNQKTYWNLALTNTAGDPVDLTGATIDASILRREVTNIVDTRNGLTFDIADYTVSTPSPIALTIANRIDASGTFTMLIDEATWSVASTDTQLDINATNCVGFSGRLKISFPAVNSTPADDSIIFLLFLVRSDGVTN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100055

Overview

Ecosystem & Geography

Associated Families

Sequences