Scaffold Water_100047

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100047
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28465
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (41.86%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005579	Metagenome	396	N
F011840	Metagenome	286	N
F015086	Metagenome / Metatranscriptome	257	N
F017582	Metagenome / Metatranscriptome	240	N
F019926	Metagenome	227	N
F026163	Metagenome	199	Y
F029287	Metagenome	189	N
F042082	Metagenome	159	N
F049591	Metagenome	146	N
F096924	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10004710	F019926	AGGAGG	MITILVEDKDVVVEQYFVTLIFDREEIESMIMEHYRDEYSDHVFRQVDEEGASFTTDFLLYNDIERHDVINDLMYYHDLKPNKIKLVENENK*
Water_10004713	F049591	N/A	MEVPVILVLPIALIMLICYLAYLKICDEVREFKKLEDELERQANESEKPYVEPLYRRRFKK*
Water_10004717	F011840	N/A	MFIQDVNQEMILERLKKLCSLGGIKPPAQGKEFIEFIQDGFARCDIETMDKAFREYLLGKYTIRQPQQLNVKFVSDIMNAYIKDNSHTIKLKPREYMAIEAPVDNSPKMSAFEIAKSNWENVRTKRAAVFPSLLSNAWDELTDKPKIDEKRVGELVEMINDNQNIWFYKMKRERGHKQKRSQLDEEIIYKAACMAYYLEL*
Water_10004719	F029287	AGGA	LEKYNSGYWEGLVIRIVVNQAYGQYTRFNKLFKQEPMLDSSKLEIPDHDVDYRKEILHYCIDIVLREYDWYHTKIWKLYSEGGRNIKPKSARSISRATGISRHEIDKVINEIKYKANKQFKKYEPYI*
Water_10004725	F017582	N/A	MDEITFLGNAWSDDYGLNITVNVEKFKQALADGRLEINKYGDVRIRVQKLKTQNDRSKATHYVAVPRPPKEKDDMPF*
Water_1000473	F015086	GGA	MVGKFAVGAEFDFAVDEVKYYPLVWLVPNGFTFNTEQKAVNYDFSMLVMDRQFESSSNTIEVLSDTAGIIIDIVTLLKRNVTDADFEIVVSGNAEPFFDSRTDVVAGHGISFSINTPYLESYCDIPT*
Water_10004730	F005579	AGG	MLKWKDITIGMLQEIGELPDDLNPIEKTAHTVAIIKGLTYEEVEKWTLNDLRKIDLSFLEQEPKHRLKWTFKHKGRRFKLVKNAKAMEAHHFIELQELGDSDKIEALHKIIACLSYRVNIFGRKIEDDYQWKVDNFKYLPAPQFYKYSLFFSALYPKLLKTTLTYLKGEVKKAKEMFSDGSDSLTD*
Water_10004732	F096924	N/A	MALTTSHQVSGTHQPAYNDNLWVVQETSTGITSNYNFKFICDVKNSTDSLLTRLKVPLYYGSNNRGVFNISRVLESYVTQDWDYTDSAASGCSNSFFDYKLEFGYEYSTGTTSPIVQTLAEATATGNTIWNAALAPSTFLNYDEGDYLMGASSTAGFLSNNVSKRIHRNQKDWLYALHDGTLDHLLVTFSDSSTVNINATTDDMVRFPIGSNISGGIPTGATSYTIRPEDSSNNLVGSAYTITIDERCSKYDAVDVFFLNRLGAVESFRFNKVRRDNFDIERRNYRANPYTLDGQNYAYTNQSFNNSQYYTEAQQRITLNSDLITEAESVWLRELVMSPRVWIYDDALYTVNITDTEYEQRYHINDKAFNLTIEAELSFPDKVQRL*
Water_1000474	F026163	N/A	MQLIKRLIRSATFTLIALAVLKPQKASSQFSDSTIREINERLIELHECRKKQELYIKLSKQDSAQIEHQAAIITNQEKTIAKEKSKNKILRNVNAVQFALLILALIL*
Water_1000476	F042082	GAG	MKIEVNYIFREEMVDPIYQQIGLQSEAQEVEIVEQGILDLSKVIGASQFYEMTQVFCEGSHSFYIDLPYEEFRYIWLTT*