Scaffold Water_100035

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100035
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30588
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (56.86%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F005026	Metagenome / Metatranscriptome	414	Y
F008026	Metagenome	340	Y
F015100	Metagenome / Metatranscriptome	257	N
F018706	Metagenome	233	Y
F022418	Metagenome / Metatranscriptome	214	Y
F026871	Metagenome	196	N
F072846	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10003512	F022418	N/A	MALTLDLNLSVARTTTSSGVPGPNLVLLTQAGAFMQTEDGKFLEFEF*
Water_10003517	F026871	AGG	MEITHYMFAGLGVALSILAFFIKRNKWEIDDMKDRLRQVEISAAGQIKDIDHLTKVCEDRREDIKKIFEKMEAK*
Water_10003518	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARSQKHEMEMARECRNNEFAMQFQASLNSGASGAFTRATRRMLALIGMFTLSFITCITTIYPSVPLVSTTNITGEGRKEFLFGLLSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR*
Water_10003519	F018706	AGGAGG	MMLDRVSVAGMSGTVATFGLSTIDTFLGIAVGAVTLVYMCIKLYQEIKKK*
Water_10003530	F008026	AGGTGG	MGRNQGEKKYLITSKKALKLLGFKSQTSLDQFHADEGLTCYIIDGMACRGGRGFAWDKREINKWMKTEGRSSDEWLID*
Water_10003532	F015100	GGA	MPISDGKGRKNNAVREETNPFIEHTSGYESVGASQREERNAEGGDDRHRVRIISKRVRICDPDNLVGGVKYLVDSLRAADIIPEDDPQAITLEVSQEKVKTYKEEETWVEVTKQ*
Water_10003537	F072846	GGAG	MRIAAHKQAPKLTSFEVFAYKQIKGQRACMKVLEVEARTAQDAGKTGQSFSKMMSYEYSHVREVR*
Water_10003543	F002390	AGGAG	MTHHATKLFPIALQELIEIGEKSRKQREQRERAKRGALPRETGACKHVACKEKQLKLELQTRI*