Scaffold Water_100028

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100028
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36533
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (82.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F003265	Metagenome / Metatranscriptome	496	Y
F010821	Metagenome	298	Y
F012435	Metagenome / Metatranscriptome	280	Y
F078387	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Water_10002811	F003265	N/A	MKWFWLLLISLVFWASAKAPCVVTDFYALSWLGNPLERHQKLSDWLTANGDNCSSEQLAGIWNNLAMWAGTADSGELRSKVLYYYAKAVEKEKK*
Water_10002812	F012435	N/A	MNEIDLVQYGVLQQKVDSMEAKIDKMESQLDTLIELANKGRGGFWMGMVFVSAISTFVGYVTHYWSK*
Water_10002839	F000166	AGG	MSNIPTSQDAEFFALCVKKWQSILHLGDWRIEKGLKPAKQAMASVEFNEGARLATYRLGDFGAEKITDESLEATALHEILHVFLHDLMAAAQDPKSSVEEIEKQEHRVINLLEQLLTKDFDGRT*
Water_10002850	F010821	AGGAGG	MTDFTFSPADFNATEITVVANTPDAKEYLAERYGFACVSINIRKSAALELADSFEFQGLSYS*
Water_10002855	F078387	GGAG	VNRNEANELLDKQKDGIVRQSIVKVTEALWQTGDISRSLPIHARPFDYNGINEWLESLCLAQGKGTGESLSRDLQGNQSGLDQKDERNQ*