Scaffold Water_100012

Overview

Basic Information

• Taxon OID: 3300002930
• Scaffold ID: Water_100012
• Source Dataset Name: Estuary water microbial communities from Pearl Estuary, Zhujiang, China
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44770
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (42.19%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location

• Location Name: Pearl Estuary, Zhujiang, China
• Coordinates
  • Lat. (^o): 22.67
  • Long. (^o): 113.71
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047767	Metagenome / Metatranscriptome	149	N
F056968	Metagenome	137	N
F077252	Metagenome	117	N
F077932	Metagenome	117	N
F090340	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10001221	F047767	N/A	MNSLVTNLYPRPNGTIAGENLSCATTGSGVQLAALDEDTKYVMIDVQDNNVIVTFDGTAPTASNGHLLLKEKGLITLSALSAKAAKFLGSGGAAIVHASQFV*
Water_10001234	F056968	N/A	MNNNPDLVHKCLDTITPSWKCVLVATVTEDGFEYDVFNKMDDEHFAENLAVLLALVSKKSLQELEKIDWTNN*
Water_10001248	F090340	N/A	MKYNTEKIRALGIDPSDLRTSLYCHWEMEKLDYHLDRMVSYLIENRLPQALCRIVIDEIEQAKDELRKIFDYLYKKEGRLDK*
Water_10001256	F077932	N/A	MIQEDFKELALQVKEMLSSDSGYVKESVAPMIGGGFTGDLMPVGYHVFPARQVCRTELGKTLMDEVTMFHQKVIDIDDDNTVIVYAESSLLPNETIRILEIWMQRFLEETMYEL*
Water_10001257	F077252	AGGAG	MKKLTVSEVSEATEFLIMAQNHQSQIDLISVKITRLLGGVENDFIHELVDQAVLNKESIEWVVEEVQSWEKYSQELKL*