Scaffold Water

Basic Information
Taxon OID	3300002930 Open in IMG/M
Scaffold ID	Water_100011 Open in IMG/M
Source Dataset Name	Estuary water microbial communities from Pearl Estuary, Zhujiang, China
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002930 Open in IMG/M

Scaffold ID

Water_100011 Open in IMG/M

Source Dataset Name

Estuary water microbial communities from Pearl Estuary, Zhujiang, China

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47233
Total Scaffold Genes	75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	64 (85.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

47233

Total Scaffold Genes

75 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

64 (85.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water → Estuary Water Microbial Communities From Pearl Estuary, Zhujiang, China

Source Dataset Sampling Location
Location Name	Pearl Estuary, Zhujiang, China
Coordinates	Lat. (^o)	22.67	Long. (^o)	113.71	Alt. (m)	Depth (m)	6
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pearl Estuary, Zhujiang, China

Coordinates

Lat. (^o)

22.67

Long. (^o)

113.71

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008072	Metagenome / Metatranscriptome	339	Y
F009735	Metagenome / Metatranscriptome	313	Y
F016782	Metagenome / Metatranscriptome	244	Y
F017814	Metagenome / Metatranscriptome	238	Y
F020318	Metagenome / Metatranscriptome	224	Y
F086809	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Water_10001121	F020318	AGGAG	MEPVNPSNFDEWKHHPVTKRLMKSLSNDREAMKEGLINSSFDDEAEVKGRCRAIAIILNLEYEDLFEPTQKKEPSYE*
Water_10001124	F008072	AGGA	VLLQPKLLNSLLRLLKRNSMQRRISKDKRYKKSHWTQNQKLQAVSTYLMLGSMTETAIVTGIPLPTLKLWKQMDWFKEFSLQLKTEDVQQMDSNLKRVINKALKATEERIDFGDAQFDQRTGDIVRVPIKAHVALKITTDLLSKQQKLDETPINREEVEKTIDERLLRLSAEFAKFAGNKMSNAVPIDVEAKVVQA*
Water_10001128	F017814	AGGAG	MSQQNNFDFNSFNDLTERKPAGLQIFLAQQLLSNALWSMEKYDNPRSQLVQDALNQIKSLRALMKQDAEVRARSE*
Water_10001132	F086809	AGGAG	MQLDLVDEMEWEDSDKVEIISLEEAGLEEASLAEETHLHGHVFRNGIHAYLDWFFDGSIENDDY*
Water_10001134	F016782	GGAG	MDAHMMSTLYAAATESLVSDASATSTFEKMIAVAFTHSSVETFAKDLKDTEKQIKKDFDVSSMPGPWRSAKSVIHGAMKLSIKLIDDNGSYVGKTFLQNKIKELKTPKEEMSAEDYANKVIRNLMNVPEGMDALKVFKLVKDFVNASGK*
Water_10001141	F009735	N/A	MQTGIVEAVSTKDVSTKFGTKPTFSMKVNGTWIKCGFKNPNVAVGYEVEFDGVSGTYGVETKSVNILRKEGTVAPSGVAAPVVAAPKAAYSGYKEKVFPIPPLHGDRAIVRQNALARATDVYIAARGGKPFDLEDTTLDLIIKFARKFEAYTAGDIDMLEAMEETADTQSPLA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Water_100011

Overview

Ecosystem & Geography

Associated Families

Sequences