Scaffold Pfga_1048343

Overview

Basic Information

• Taxon OID: 3300002920
• Scaffold ID: Pfga_1048343
• Source Dataset Name: Hot springs microbial communities from Mammoth Hot Springs, Yellowstone National Park, Wyoming, USA-MHS Pond Facies_Gas lift
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Illinois, Urbana-Champaign
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9440
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Springs → Hot Springs Microbial Communities From Mammoth Hot Springs, Yellowstone National Park, Wyoming, Usa

Source Dataset Sampling Location

• Location Name: Yellowstone Mammoth Hotsprings
• Coordinates
  • Lat. (^o): 44.9766
  • Long. (^o): -110.7016

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026171	Metagenome / Metatranscriptome	199	Y
F028964	Metagenome / Metatranscriptome	190	N
F059420	Metagenome	134	Y
F061432	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Pfga_10483432	F059420	AGGAG	MEIELYRGTSTLTTLHYRSVPGQYSWVLRDFQGDLMDEVEVLTREALGGRTLVAGQQGRARRIVIVLDVQGTSMPNLHAAIRELETHTRWRNGTPLELLVRTNSSALWNFIEVVLEQMSAQFEDDQYRATVTMRFACRRVYWKEDIGVVTASNSTLTGNVFVVNLNTMAFYPITGISGKIFNIEYRKESGEWIIFTNDKVWRAPIAGGSATLIGQVPGATILRGATAHDGSILVVAQGVNQLVRFNYPSSAPTVLGSFNGTPFRVRRFGDLYVSVGEFSQYQSATWLAGLVTTNVSGTIVNTFSPFPTSAIYPGGGRVNDVLIKDGVFVAVAHRVTLPWQSWVVVWSNQDLPYYVVEGESPWEPFEIDQSSPIDNVTISANSGIHAGRSFGTLCRLRNLSGIVPYAYPTAPIGGLQTGCAIERFLSPSNEPRKVFILGDDGTAMPLFTANANSLAIRRAGNVMCVGYVTPTAKVWTPLSVNVTSIPNDGTTAEIVPRLGSLSVPVFSFYSGVNDEILGEVIDPQTQAANYEPKYHSGGAVTPLPGTRYERMFKGSKNDGIAKYWFAVGGSVPSVDVVLSRYKHDWR*
Pfga_10483433	F028964	AGCAGG	MIGADVTLALTSIGPEGRTEAIALGGSFERRAIEVAECELEISTLGTSYNLSAYGNVLLVMLHDRREVYFVTAIERRNTYYVVRGETFLRYMRDYYPDRYAGTSDAQWTGDAAEGVLRSLRPTENVAVYMNVVNFRDYWIVTPDNVPPSVNVETSFAWASRLEAAQEITRLAHAQGFPLVWWFEAGRWCAPKSADGNYIVEPSVALVFAHGLVQKGLFRILWDGSIKYEAWVYDRSQPTAGVALGYGHGEDRDVNRARAPRGLFNGWTYWEGRLDGRATGTSSAAKAALMRWRPIEAGAGQAYSRQMPRLGDQVFLVAGDNQRCAGVAYVVSERYSVSGGQIASAEVGVMQI*
Pfga_10483434	F061432	GGGGG	MTSGRIDFLERGDSFAPATACVTWTGFVNVSSNNSVTLAVTGLSEVTGNVFEYVPSAQALRIKQAGVIGFLVNISWSAYNIGNLVLQMRQASPLHEWLLLSHPYSTHYNIDLGTGGVRLVNVPSGGANYQIYVTNSGGIGNFTLNVITIRLVYLGRR*
Pfga_10483437	F026171	GGTGG	MSVGFHKMRATISAAQLADYPVAEALKVLASMPEARTFKLAPEELRRILLEGLPEQYAASLFERAGYRVEVSLADLAYLARYDDTLAELVSSIILYLTQC*