Scaffold JGI26061J44794_1028837

Overview

Basic Information

• Taxon OID: 3300002919
• Scaffold ID: JGI26061J44794_1028837
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Bottom_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1143
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9728
  • Long. (^o): -44.9905
  • Depth (m): 5110

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006865	Metagenome / Metatranscriptome	363	Y
F013774	Metagenome / Metatranscriptome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26061J44794_10288371	F013774	AGG	LNEKLLELKRKKLQRQILYLRSELEETTFIFQDCLIEFEGEFREYFKDKPTEGQKKVTTDPPEFNIPREDVNVVFRMIAQKTHPDKLVKEDXLSSTYKEKVDMYKEALGSVDNKDWSRVIEIAMELGIDVSDVKTDDSDYLNESVKGLTEKIKELKNTYAWTWHHTEDKNQAKQMI
JGI26061J44794_10288372	F029469	AGGAG	MSNKPEHTIYFREIVRKLKEIEVEFRKAPKQPNDMFYGELDDKIEFMELPFPIEILDRLSPDEKETXFIWLNRRNMPQA*
JGI26061J44794_10288373	F006865	N/A	MEKINRIIKVKDVLYERLGVMDVERSNDKGTDYWKEQWGADTILRNGNVYYYCRTIINAEFEDI*