Scaffold JGI25616J43925_10141137

Overview

Basic Information

• Taxon OID: 3300002917
• Scaffold ID: JGI25616J43925_10141137
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 968
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000512	Metagenome / Metatranscriptome	1064	Y
F000739	Metagenome / Metatranscriptome	913	Y
F018046	Metagenome / Metatranscriptome	237	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25616J43925_101411371	F018046	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNA
JGI25616J43925_101411372	F000739	GGTGG	MKRFELWLXGILAAAISGAAGGVLTGLAAVGIDPQHFNLQSGSGATMRIGAAAALINAVIGVAAYLQKSPLPQD*
JGI25616J43925_101411373	F000512	N/A	VWGWNRLAWIGGKFEERDEHGALLRERIELRLEPKYPAVNRWHIERWLPPETYGSPRAWYAQTIERENGISIPALGPYPSRGEYEHCFTLESPRGGFLQLTPTIAEHIACAIEWSKKFPRAKARSSIYAREKRSESNYEQWAFDVLDDSVPAFHKQXFVAVV*