Scaffold JGI25616J43925_10044100

Overview

Basic Information

• Taxon OID: 3300002917
• Scaffold ID: JGI25616J43925_10044100
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1947
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000440	Metagenome / Metatranscriptome	1137	Y
F001138	Metagenome / Metatranscriptome	767	Y
F011502	Metagenome / Metatranscriptome	290	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25616J43925_100441002	F000440	AGG	VACDRLPMRKPTKCTPARRATKYLKRIAALTGAKEVCGESYRLTAGRIHFLVDSKFVRVVSPRSESTCFSVAADPDMPSAEVVASVLLQLKNNPRLFGKWRQLRGYTFKANGKMFRDTYQLTRDET*
JGI25616J43925_100441003	F001138	GGCGG	MTPANLSTIAFLALIVWRXVFAGLRRRPFVREIATPQQQHNNALEQGLHILERAVVGVIAGNRFENSSDDLDPLDRKDRAKTYLRRIVALTGATQIDDAYLLDVGKMRFHVRDRYVKRLRDVTDPECACEETCFYPVHKGMPKEEEIATALVQLANNPALFDKWAVRNGLAFKMDGQVFNRGL*
JGI25616J43925_100441004	F011502	N/A	LLEYDPATADMEEVNNVIAEYETKTGAQPFDMATGERXXKVTREQNEVLMVHPIAGG*