NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25387J43893_1038344

Scaffold JGI25387J43893_1038344


Overview

Basic Information
Taxon OID3300002915 Open in IMG/M
Scaffold IDJGI25387J43893_1038344 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)650
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora erythraea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameAngelo Coastal Reserve, California, USA
CoordinatesLat. (o)39.73825Long. (o)-123.6301Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104854Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
JGI25387J43893_10383441F104854N/AMPALTGTMVPPENKLTASVPAMSDAVAAPVPTRSVPLRKPTSAEVASKIGAGLGVFALGVVLGGPLLYFGWTVAGTAALIFFGGGGLLVMLFSRDEVSECPFCGAALDNLPKPNADGVPRPVQCRKCWEYSGLQKDFVSPYNPNAVEERPTFRSPLAQNVVWPRGCVQCGVEPTRFDEVGTFSVNKGLLVVGAVRVKTFKLPGVPYCAAHKKAVEM

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