Scaffold JGI25617J43924_10029855

Overview

Basic Information

• Taxon OID: 3300002914
• Scaffold ID: JGI25617J43924_10029855
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1933
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100298552	F002560	AGGAGG	MVEHNPPPHADRVPLIPLPTALYVSDGLVFELYDGGQPYRRFSIRWERLVPAMENPEAASEGPQAVSRVHQE*
JGI25617J43924_100298553	F000208	GAGG	MRIRVTTRADLYEKRKQEHIECGYRIEDERPIPVNGFCYFIAMREMPVSDTVDELVAQAINGGRGLHRDW*
JGI25617J43924_100298554	F007596	GAGG	MSLRIVRFDVKCNLHPRYDPARDGRPQHSNCEGCESLYVIHLYTKTAKRRADNENGILVRTLSGREEQHAIDEPGQLSNTENK*