Scaffold JGI25617J43924_10018412

Overview

Basic Information

• Taxon OID: 3300002914
• Scaffold ID: JGI25617J43924_10018412
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2392
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016649	Metagenome / Metatranscriptome	245	Y
F017625	Metagenome / Metatranscriptome	239	Y
F075920	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100184122	F017625	AGG	MPEPKRKETNEEEFFGFAKSYLSEAFPNPQRIDCPPDSDLIRLAEHPSEVDPFVSQHLTCCSPCFNRYMELLADLKRRSAG*
JGI25617J43924_100184123	F075920	N/A	MKRYSSETSTKTLEASGLFVGTPVVPTMAAEGRSLFRLNAVDRRGRKIEPAVLEAAEGIYSRAFEHGLRLLGDPAVVTTALEEVAAIVSRAVRTKDPRGDPVQVRDLRAYLFRAFLRHVNHLKRKEVLVVGLSETARKSEPPWADASRELSNKILLDEVLAQCDFIAQDMAWRRMQGFSWEEVGKVHGLSAHAAEARFSHALQQARERLKI*
JGI25617J43924_100184124	F016649	AGG	VAAGPRYYAPAGKGVSTHVLLEASAITSSILLRAADQSPRTHEGENMRKKCSVLTLVLCLTIIETVGCERLSRPDVSGVWKGTIQASAAGGKEKWQGSAELTLNQNGDALSGTLVFTHPQAGRVQVPISSGIVSKDAVTFSGQTQFPLGGSIEVTFHGKISGTSLAGTTDMTSRGLFGTVTNTGPLTLSKQ*