Scaffold JGI25617J43924_10004402

Overview

Basic Information

• Taxon OID: 3300002914
• Scaffold ID: JGI25617J43924_10004402
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4179
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000437	Metagenome / Metatranscriptome	1146	Y
F009766	Metagenome / Metatranscriptome	313	Y
F095121	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100044022	F095121	GGA	VLGRTPLKFTINHARAVAGNDIYVSVQADDGKSLTSVRAELDGIELAADELSAPSDFYEHTFSRAGSAGPNTGHTLIVTAELNDGTEHSSTSIWSDQI*
JGI25617J43924_100044026	F009766	GGCGG	MFRRRLLKRTAVFLAGSLAFPYVSQIYPPLDLDLMLVFFGVLFFIALTVAVILDRRARNRRELEVLKRIYTGFIPLPWILAAMLLLNGKLDSQKNVAYHPTTVDSRYNMPGIVRGTRRLFVHSWREGQKIERLAVDLDDYERFRAGDSVVVGVEPGALGIPWYYGVYRR*
JGI25617J43924_100044027	F000437	AGGA	MTLRGVCAASAFLLCGVLVCAQAPSQKQLWKSVAFAIVKFNNEAPKSWNIYHTEKKGLLLVHLWKRYLLVDTKEQEAYEIDPQTVKAHGEDVEWSPTDKPDEPLETPEWKTRDVGSMQLVRFRLGKDGHFLELQIPLLINGKPAY*