Scaffold JGI25617J43924_10004327

Overview

Basic Information

• Taxon OID: 3300002914
• Scaffold ID: JGI25617J43924_10004327
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4204
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000321	Metagenome / Metatranscriptome	1304	Y
F013723	Metagenome / Metatranscriptome	269	Y
F080467	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_100043271	F013723	N/A	LKEAFPTLVPAVRDQQQPFLNDRRSFAVEDIRVDTHLLDEAKTAGYATKVLFISTEDANLNVGRILVRMSRGGKPETAQSVIDSYRESTRNLAEGCK
JGI25617J43924_100043272	F000321	AGGA	VAKRRSVHFAVYNVRLLSXLDKLLRDRPRYLGELSTSINDALLAVDLDTVELVKLQSRQKQTGRETQVVILRRLRKRIHQVAQKRKCSMNELVNSALLAHYSKAGSVKPKKSTKRHGVSRHSYDKMSDLERRELHQMLSELLATQSVSAVAEEPDGTHYEYDRNLKATVRVTADGERHPVKRRDTNFEHAPQ*
JGI25617J43924_100043275	F080467	N/A	MLSEKPLPTASVKRHSLDAIDVENDAELDALTAQVLAAGNKIAESERAEMIRKGIIDEDGNLLKTELPEDMRKDADRDFGG*