Scaffold JGI25617J43924_10000063

Overview

Basic Information

• Taxon OID: 3300002914
• Scaffold ID: JGI25617J43924_10000063
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15481
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F007165	Metagenome / Metatranscriptome	356	Y
F050281	Metagenome	145	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25617J43924_1000006312	F007165	AGGAG	MTPPDRRKFQVSCDAGSQGRFEVGTDTLSVRVGQRMRAGKEEEMWDSVNILCKEQPDGSLTVEVLVSHPDWNEAKTIAAIHSRPQDNDTGTPSLKCDLQLSGPDGLQRARGAQ*
JGI25617J43924_1000006317	F091706	AGGA	MKADGYSEIYLWNRNADHLIRVLQCMESIGILSKQDMKVYEVQVEEVCAALNAHFSGVMAIRERDDHTRLKRQRTA*
JGI25617J43924_1000006318	F000528	N/A	MGEWKAQISVRVRQALRSELEEFAAREKRKLGNLGEVILEWAFEQLKVAGSTERLLKYKIRLPETALTGRKLRK*
JGI25617J43924_1000006319	F050281	GGA	MINQRQFSSEENKNIVRAKDALGQLKVNPRDSVAVMEFYETCGRELQEVAVRYFGKSQLGKKAVLNLLVAVVSRARSYDPQSMNAAEWVSDCADAEARRLREALGGAGGSRGRRTRRAV*