NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI26060J43896_10097067

Scaffold JGI26060J43896_10097067


Overview

Basic Information
Taxon OID3300002913 Open in IMG/M
Scaffold IDJGI26060J43896_10097067 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)771
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9831Long. (o)-44.9892Alt. (m)Depth (m)754
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027018Metagenome196N

Sequences

Protein IDFamilyRBSSequence
JGI26060J43896_100970671F027018N/AMKKIIIHFLFVASCLSWVLFFILSFIFFSPNQTLQVLNNYLPSSYDLQYSEVVNNGSFLNPILEFSNISIKINDAQVFSANKSQYGFLVSSALIIGKLTMSHIHLEEANILLADYSAQKMPKLKINFDKNISISFYDTSLVHLGSEMLINGQLDSLIPGLANGQININHHGKISNFSINSDGEDSNFLINXNTLDWFKFFSNDYLSLSKTMQFGINAIGSLTPKGSSIKGS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.