NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI26060J43896_10096831

Scaffold JGI26060J43896_10096831


Overview

Basic Information
Taxon OID3300002913 Open in IMG/M
Scaffold IDJGI26060J43896_10096831 Open in IMG/M
Source Dataset NameMarine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)773
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean
CoordinatesLat. (o)-37.9831Long. (o)-44.9892Alt. (m)Depth (m)754
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061273Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
JGI26060J43896_100968311F061273GAGGMADKIANGKDQKILQHDIEEIDKKVEEVQQMELAAKDQIVASKSFIYVIIALLIYLVFMVIPDMMRKLHGWKKTSTLY*

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