Scaffold JGI26060J43896_10093671

Overview

Basic Information

• Taxon OID: 3300002913
• Scaffold ID: JGI26060J43896_10093671
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 789
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9831
  • Long. (^o): -44.9892
  • Depth (m): 754

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26060J43896_100936711	F051547	AGCAG	MIDPLLIATISVIGGAVLNTVRGFLGSDETTYDIKKFFGAVIIAVFAGIAVAQTLSLAGLGIVETVLIGLSIGFSVDYAVSKAKK
JGI26060J43896_100936712	F060433	N/A	MELFEPLLIASLLGIGGALFGFFRKMSSTQKDLCETVARLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLRDK*
JGI26060J43896_100936713	F071758	N/A	LFIKAWYRLIMSDHTCKRCAIPKYGYTDGTHSIYLCYKCGRYEGISGGDEDFVNNINENPMILLHMIKAKTLIPIS*