Scaffold JGI26060J43896_10035283

Overview

Basic Information

• Taxon OID: 3300002913
• Scaffold ID: JGI26060J43896_10035283
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9831
  • Long. (^o): -44.9892
  • Depth (m): 754

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016619	Metagenome / Metatranscriptome	246	Y
F034394	Metagenome	175	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI26060J43896_100352831	F016619	N/A	MAITIAQNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGGSDTYATNGNTVDLSLGGRISTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAFGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF*
JGI26060J43896_100352832	F087902	N/A	MTYSNHNVKDVSSDGAVKAGHGVIVSVHVVKAGASGDKVVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIFAEVTGTTAKYLVVFK*
JGI26060J43896_100352833	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPLFLQHRNIYQLDGTEGDKIEIWKGESDSWENIIGQDQWYHGEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDSEIPLDVADAIIKMASIEIMNTSFRMDELPSGGSVSPSESKKYWQEDIETCINNRREVFVI