Scaffold JGI26060J43896_10001930

Overview

Basic Information

• Taxon OID: 3300002913
• Scaffold ID: JGI26060J43896_10001930
• Source Dataset Name: Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - AAIW_A/KNORR_S2/LV
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7681
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Affecting The Dissolved Organic Carbon Pool

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean
• Coordinates
  • Lat. (^o): -37.9831
  • Long. (^o): -44.9892
  • Depth (m): 754

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047713	Metagenome	149	N
F081895	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI26060J43896_1000193013	F047713	AGGAG	MEIIGQGEVAALKIIKDMFGNSCEYLTQVKLSDMITPEYLETLSDRQLKETIDIVVDTGFQYLAIRVQDKHHASARMATIDNIQKNMLEWNGWKVIDIWYYECKELWKDRVNEKSRLELELAIKESSVD*
JGI26060J43896_100019309	F081895	GAG	LYDKLKVFKRIKKLELILFTPINLETDEELEERHKKGVLMHYLRALEKLMVDQK*