Scaffold JGI25386J43895_10012456

Overview

Basic Information

• Taxon OID: 3300002912
• Scaffold ID: JGI25386J43895_10012456
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2442
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021946	Metagenome / Metatranscriptome	216	N
F042817	Metagenome	157	Y
F071046	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25386J43895_100124561	F071046	GGAGG	MIRPENRRQWVPKTAELTLSAGLAATYIITTFIPLTPFIGGPGFITLEIVMLPIIAALLRPIPAFATVFVGSLGMALGQPSFYQVFGLPGLLIPLVAVGAGSIAFHYRLGPIVPWAYVLAGAVYYIALSKGGTLF
JGI25386J43895_100124562	F042817	GGA	VSIVVDTDSPMRQTKKKESMILDPCYSLVVNQSVTSALAAEALMAPVKRIIVDAAQALAATVAELRGPLSATIARRHCLVERSETTSLDLFASLGLQALMSAMTMGWTLESGWMMRRIWMSARSSVRIRMGRTCMMLWIGMRVALGFRLGFHVDSSRKKSRPVIVYF*
JGI25386J43895_100124564	F021946	AGGA	MRVASPLGTVGILVRYWVKGRFTKATILGLIIGEAFSVIFILFGSSTYLSFSNRVGLTTGLSEVAGSLVLALYLVGLIQSGFNGGGLPASSSDVDYVFTSPVPPREVFAAKVLLNSLTTVLFGFPPIIVLYLRFSAYYHTPMTAAILAGLVTLVFLVIGLLLAADITL