Scaffold JGI25390J43892

Basic Information
Taxon OID	3300002911 Open in IMG/M
Scaffold ID	JGI25390J43892_10001107 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002911 Open in IMG/M

Scaffold ID

JGI25390J43892_10001107 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5497
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5497

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021081	Metagenome	220	Y
F026530	Metagenome	197	Y
F090183	Metagenome	108	N

Family

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_100011073	F021081	AGCAGG	MPTANQLHSHRKYILAIIIVALIGLTIGGLVTSTFLIGPDVTDVTGTVSLGSPYFDQYHGTPNHILFNNAVTGNLSSGVFPDKFYQVYLPILLNGNYGVTIQWTNVTSGAVSFYSCAANPSTFSSSNQNATQNFSC*
JGI25390J43892_100011075	F026530	N/A	MEVWEALIGPLGFAVKSLRRRGFHSYLAFLGLALTVATTTFLLLLGQDLATRLGIDSSMRSTFGISWLIFAYLVLALGLIGIVGLLSTSYLVSSMISQRMSDIGVIKAAGALPRRLLSYVTFEALLVIVSSCLVGALSALLVYASWSWPSISLFKQIGPIANAGATILIVVPMISFLLAYVVASFRVRRIVGSSSVDAISKQLANLDLRSLGRPLRIGRFGSAFNMATRNVSRDRGFNKTLLSVGVCICLSMVVLSGALVSADTSTSYVVRAMPPHVLIVANSNIYNQYVSFATSFSRIAPLPPIDYGNESYIISPQNASAFRAIPGVQTVDTRLITMSSITGYIKAHFASNQDTGENINTQIIPEADTGSTDALIVGINATSAIGDWYTSDGFLQSSDAQYTMIAGDSLVGNIVQTPFNLSQVSAFGYRYDVKSALVDPLNAGRVLYAPVQTLQKSLGLTGFNVLLLKVNNDPIVLSSVSQLASSFGFTVGSQDPILKSNLAFLNGIWSHIFLIPILSLSLTCGILLSYLATNFSRRFNDYVVLKVLGANVWYRLRLLLWESWGVLAISMLIAIPVAWAVSIFFLIPDPIVSIANLELSTIVSASALSGVSVASAAILSRRIGLTTVKDLKP*
JGI25390J43892_100011076	F090183	N/A	MGTQLGKDEVRDLPXPFESVWDSALMXLQQPGWNVVXADKGTGGLEAKIVMDLLTWTETFYVNIVRIDENATRVHMGRIGVSQPLDWRLAGQYIDSFLNKLENTLKGAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25390J43892_10001107

Overview

Ecosystem & Geography

Associated Families

Sequences