Scaffold JGI25390J43892

Basic Information
Taxon OID	3300002911 Open in IMG/M
Scaffold ID	JGI25390J43892_10000101 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002911 Open in IMG/M

Scaffold ID

JGI25390J43892_10000101 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13664
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (55.56%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13664

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (55.56%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	Angelo Coastal Reserve, California, USA
Coordinates	Lat. (^o)	39.73825	Long. (^o)	-123.6301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Angelo Coastal Reserve, California, USA

Coordinates

Lat. (^o)

39.73825

Long. (^o)

-123.6301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003037	Metagenome / Metatranscriptome	511	Y
F005700	Metagenome / Metatranscriptome	392	N
F007915	Metagenome / Metatranscriptome	342	Y
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_1000010116	F046962	GGA	MEETANSGYPPETTTRIVLQDTMTGDQLKNLLAELISSSASLNVRVWLDGVYTDIENAGPHREWMKGREVYFKVEGKVDGQNCLEEAAPRSI*
JGI25390J43892_1000010117	F042845	AGGAG	METRKWKAFLRMNGETTVDIGQDILTEFKAMVEYLKWIGIDYSMVVQVEGGQREQSRTLALEQSPRRRGRGQVGD*
JGI25390J43892_1000010118	F030030	AGGAG	MAKFIMSIGDTAFEILANEAKNRDVTVQQLLRAVVVPDWIRQNADGQPPRENRPNLIQSSIYGGDSRNSRLLVSPVARLRR*
JGI25390J43892_100001013	F003037	AGG	LLVEECRILWVEFKCPLCGKDLDDDKTMANFLVCADSSHGPLRFFTGDGCYFTTNEQVAEDLMKKGKRVHIVDPKEFFGNQTINLE*
JGI25390J43892_100001016	F007915	N/A	MSLAEASKPVLPSSTVRSXAMIGIVLYAFGLVLNEIGNNLTLLWLVPYADTISALGFVIALYTASLAGLGTRLTVLIGLIYGIGIFYVSEPDXTYVASGLKVGSYSHDIGLGLIGFAMXLLIALAFYLTRVKRAHTTQPKTDPGSSV*
JGI25390J43892_100001017	F005700	GGA	LTYXTEYTLGFLALLPLLATGVAKGTGWLVTIIVVYVGVPLLIWSLLVDRLASLVLRIICRLRESSGHQYYFERQVGKPGVSRRILRDIRVLVFVFFLSALIVPQVTQVNPXNLVIVSNAFIYVAIFLLAIPSSIHVLLWVLEDSGLRCHNTTRLTVTVPAAWTSRWLSSLGGIGAFVSFAVAMGGSLDRAISLGFTXMISLLPSCILAPTLFYRRLEPGIIAKIRQSNAAMTMARLFPQVSGPSLPSSSAPTLRSVRVNEDTKKTAEPHS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI25390J43892_10000101

Overview

Ecosystem & Geography

Associated Families

Sequences