Scaffold JGI25390J43892_10000086

Overview

Basic Information

• Taxon OID: 3300002911
• Scaffold ID: JGI25390J43892_10000086
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14307
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007968	Metagenome / Metatranscriptome	341	N
F010240	Metagenome / Metatranscriptome	306	Y
F021077	Metagenome / Metatranscriptome	220	Y
F043868	Metagenome / Metatranscriptome	155	N
F053208	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_1000008612	F021077	N/A	MPKIKFKKEYLERLTKPIEKKERAKKEETMAEVQSQPRHATGFVQFCGTCGKNQMFRVDTLGWKSCTVCRXTAPDRSQSPI*
JGI25390J43892_1000008615	F010240	GGA	MIRQERWVLFRDLPRRILPATKVRELLGVYLLASLSNAFLASSQYLAVSSAVASYLPVDSGTATLIAAYGRGLGIFLAVFLNSLVFEGILAALVLILSLSAALKTGWRWAYAFSGVMVSGFVGYWLGARFLVVLEWISTLQDNRVDSSNAYASLFWFGLASTIFYLAMILVLRKSYGNLREQIGCQG*
JGI25390J43892_1000008618	F053208	GGA	METMRYGRTYLAISISNVTFPRTGIGTDYSLVISDVNQTLTDSIVKGFGARVTSLSIQDSVDGSTLTWGNGHDMSDAVQATSIFFFRTSTNHMLRFTIAFQLYDLLPLGSIPDQTVTDSFNITQTVL*
JGI25390J43892_100000863	F043868	GAG	MESRKRRRKHSKRLASSKYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYTFWCVPKGDPVFANPGLETMGEQLDSVVSYNGNYEIPTRYFERDYAGDLVVVKPFLLPETRLTPEHPVLFCGSTPQKSKWYDPQTRPSLKKEWKPASELTRDDWVFFPIFKGNREADPELLYLLGLYMAEGYPTGKQVCFSLGHHERELAERICRMVARHWNVRATINSHRSGLSVRLSKESLADFMRKEFGSRAFNKKIPSWILEQRNPRPFLDGWIQGDGFRQGNTWRLHTSSRTAAYQALLIGSRLGIMPAIYRDDREGRHLIEGRRVNAKPSYEVRFHLEGSKYSNKESHVVRTRNGYWIRIKEIQREKFSGKVCNMETPSNTYLLSFIVHNCADLPPEFSNQDGTWTGYRLDGDKTHTASTLKRYGRHKSWIDPQYKFEGKPVILVYNAACLGKGIPIILRKARKQR*
JGI25390J43892_100000864	F007968	GAGG	MRYILTVDFEDDIDIESFMHFVAYHTKRLKCASKDVFIRLAHEWEKQLVNPHEPTNPNGVKKEKKKTLKETSE*