Scaffold JGI25390J43892_10000001

Overview

Basic Information

• Taxon OID: 3300002911
• Scaffold ID: JGI25390J43892_10000001
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49314
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (73.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000916	Metagenome / Metatranscriptome	835	Y
F008075	Metagenome / Metatranscriptome	339	N

Sequences

Protein ID	Family	RBS	Sequence
JGI25390J43892_1000000116	F000916	AGGA	MGLSKLKEPKQTRSLEERYEMLRKTLAHYLLLQVGTFVALAGFDAIGPAMGVLTDKKAELKVQEIKEKGQEDRVEALSQNLAQSMGETFDSDYDIETGNGARTVRLHRCGCIESVVAQAEAYELTGAQARSVFCGTCMSSYKKAAESLGLGFQGKLSGKHGCSMSFSTK*
JGI25390J43892_1000000136	F008075	AGGA	MRESREFANTFQLSVAEGLADTLGSIVMQTLKTLLTYSLETYAEKPSELHRELSKVFGSGATTLERMITKELFQRLSLRYSNELDFEASVNLARRDMILSERGNN*