Scaffold JGI25615J43890_1001256

Overview

Basic Information

• Taxon OID: 3300002910
• Scaffold ID: JGI25615J43890_1001256
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3388
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Laytonville, California, USA
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021873	Metagenome / Metatranscriptome	217	Y
F042843	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25615J43890_10012561	F042843	GGAGG	MRLARFLTFVSGAFLLLASATLFLFRSAPTASAQTTTPPSSTISSTTGPLAWDFAPVGGGTVTNVGIQDICPPGMCDDHDLNIVLPSATFYQTMTAQVTFKYTWTSTVPTDLDIFAISPNGADHGPGSPDDTSTGPGEEDLTLTDPLPGLWHIRSVASLVPLPTAAHVVVTMTVAPRPT
JGI25615J43890_10012563	F021873	GGAGG	VKNLENPFDIMKVRSDDSLAWLEAAEELSAARIRVRELLADSPGEYIIFNQETKTLVAHFSIHEAPQMPEWWRQDDEYLEELQPAVAELDDDYDEFLEELEPAVA*