Scaffold JGI25388J43891_1000718

Overview

Basic Information

• Taxon OID: 3300002909
• Scaffold ID: JGI25388J43891_1000718
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6651
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.73825
  • Long. (^o): -123.6301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001032	Metagenome / Metatranscriptome	800	Y
F001745	Metagenome / Metatranscriptome	643	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25388J43891_10007181	F001032	N/A	MDPKENDTVRRGESVGLGEMVAMLEKRNCRMGSCSRSAITTLDRQALCLNHFLLRCYEKLEGFDPRGRKFSAEPVDLVSMRAFIEECSRKALDVSLQSENLSNLQRGRLLDILLWAGELFLLLRAPRLTLVQSAASSEVPLSASGASQGF*
JGI25388J43891_10007182	F001745	GGAGG	MASSAYYPNKTQGVAYPYGQAALLKTQPPSHGKSGVPPLTALSIEFVAKPQEAHRVEVAIPTAVAGALKDVTGFAGCLVMVSDQEARLVTVVTLWSGHDRTKSCNQNVRWVNALLAPYLDHRLRMQTMVAHLPVLPMNQPETVAAGESAAMQDLESADETVCVA*