Basic Information | |
---|---|
Taxon OID | 3300002908 Open in IMG/M |
Scaffold ID | JGI25382J43887_10268884 Open in IMG/M |
Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 772 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Angelo Coastal Reserve, California, USA | |||||||
Coordinates | Lat. (o) | 39.718176 | Long. (o) | -123.652732 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F022254 | Metagenome / Metatranscriptome | 215 | Y |
F067174 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
JGI25382J43887_102688841 | F022254 | GGGGG | MRDRRRLPSRQRTYIRLYARVNRLEDVISHFYNVINELRRDVLTLEKNLNPLAKDGPCTH |
JGI25382J43887_102688842 | F067174 | N/A | PPGGRIKAFVMADASQYLRVQAKLKELIERASSAAHANLHRRIKPYPLGFAVRANGSKFAFSPENIEDNDAAVAHIRTLFLQHNVVCYVLTLAAVSKGKQYVLFSAEDESGPMVVGHREIIMQPAPHLGPLEIIESNFAEGRFVGLLPHPATPGMQ* |
⦗Top⦘ |