Scaffold JGI25382J43887_10138728

Overview

Basic Information

• Taxon OID: 3300002908
• Scaffold ID: JGI25382J43887_10138728
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1247
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000517	Metagenome / Metatranscriptome	1061	Y
F018957	Metagenome	232	Y
F033340	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_101387281	F000517	AGGAG	MRMCLALLLAAVLALSPFDGIAGERQIVDVKELAGRWQGRVTREQGQERATLIVSADGSYRALTPQGASTEGKFYLQDGKLRYRSSRTTGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE*
JGI25382J43887_101387283	F033340	AGG	LTPQGASTEGKFYLQDGKLRYRSSRATGTASLSEDRGKTMLTVMPEDPKYHTGRAEYERVKE*
JGI25382J43887_101387284	F018957	N/A	FLARSGILGTMTRWLVVVALVAGCATQQASQPDCTMKWTGQPPVQVDSCTGRGEDLTAGWHWYDYVFGIPFGIVGFYDSARDAD*