Scaffold JGI25382J43887_10029733

Overview

Basic Information

• Taxon OID: 3300002908
• Scaffold ID: JGI25382J43887_10029733
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2946
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: Angelo Coastal Reserve, California, USA
• Coordinates
  • Lat. (^o): 39.718176
  • Long. (^o): -123.652732

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011479	Metagenome / Metatranscriptome	290	Y
F017116	Metagenome	242	Y
F020766	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25382J43887_100297334	F011479	AGG	MSAVSFEDLVSQSVSETMSKILGSTTWKSVNFFFDTKTAASEPEAFAALLDKVFGFTAKVLQKKIAETLLNKVGAVQPSSTLDFRQILRLAKAKFPRAPVPGQLGS*
JGI25382J43887_100297335	F017116	GGA	MASDPIIAMFETFNLVLILIAFAIFTRLAFKGKSLGSFRFQLSIFLLIWVISEIPHIAESIGFLAATNYEDTGLYLHAASMTVFAXFVGWRSLRFLTIHQPTPTSTVSIPTDXPKVLKS*
JGI25382J43887_100297336	F020766	AGG	MDLVTGGIVLFTIMVAAGXIPLIMALRVKTHSLRILSLLLGLFAVVHGFYHLAFGFQQELLADAVFEPVSLLLLIGLGAYYSKVGIA*